Index

A

a (thetis.rungekutta.AbstractRKScheme property) (thetis.rungekutta.BackwardEulerAbstract attribute) (thetis.rungekutta.CrankNicolsonAbstract attribute) (thetis.rungekutta.DIRK22Abstract attribute) (thetis.rungekutta.DIRK23Abstract attribute) (thetis.rungekutta.DIRK33Abstract attribute) (thetis.rungekutta.DIRK43Abstract attribute) (thetis.rungekutta.DIRKLPUM2Abstract attribute) (thetis.rungekutta.DIRKLSPUM2Abstract attribute) (thetis.rungekutta.ERKLPUM2Abstract attribute) (thetis.rungekutta.ERKLSPUM2Abstract attribute) (thetis.rungekutta.ERKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKTrapezoidAbstract attribute) (thetis.rungekutta.ForwardEulerAbstract attribute) (thetis.rungekutta.ImplicitMidpointAbstract attribute) (thetis.rungekutta.SSPRK33Abstract attribute) (thetis.utility3d.JackettEquationOfState attribute) A_support (thetis.options.TidalTurbineOptions attribute) ABCMetaHasTraits (class in thetis.configuration) AbstractRKScheme (class in thetis.rungekutta) AccumulatorCallback (class in thetis.callback) ad_block_tag (thetis.options.TimeStepperOptions attribute) (thetis.options.TimeStepperOptions3d attribute) add() (thetis.callback.CallbackManager method) (thetis.utility.SumFunction method) add_callback() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) add_conservative_terms() (thetis.tracer_eq_2d.TracerEquation2D method) add_continuity_terms() (thetis.shallowwater_eq.BaseShallowWaterEquation method) add_control() (thetis.inversion_tools.InversionManager method) add_export() (thetis.exporter.ExportManager method) add_momentum_terms() (thetis.shallowwater_eq.BaseShallowWaterEquation method) (thetis.shallowwater_eq.ModeSplit2DEquations method) add_new_field() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) add_nonconservative_terms() (thetis.tracer_eq_2d.TracerEquation2D method) add_term() (thetis.equation.Equation method) add_tracer_2d() (thetis.options.ModelOptions2d method)

add_tracer_system_2d() (thetis.options.ModelOptions2d method) add_turbines() (thetis.turbines.DiscreteTidalTurbineFarm method) advance() (thetis.coupled_timeintegrator.CoupledLeapFrogAM3 method) (thetis.coupled_timeintegrator.CoupledTwoStageRK method) (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) (thetis.coupled_timeintegrator_2d.NonHydrostaticTimeIntegrator2D method) (thetis.implicitexplicit.IMEXGeneric method) (thetis.rungekutta.ERKGenericShuOsher method) (thetis.rungekutta.RungeKuttaTimeIntegrator method) (thetis.timeintegrator.CrankNicolson method) (thetis.timeintegrator.ForwardEuler method) (thetis.timeintegrator.LeapFrogAM3 method) (thetis.timeintegrator.PressureProjectionPicard method) (thetis.timeintegrator.SSPRK22ALE method) (thetis.timeintegrator.SteadyState method) (thetis.timeintegrator.TimeIntegratorBase method) advance_picard() (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) (thetis.timeintegrator.CrankNicolson method) (thetis.timeintegrator.TimeIntegrator method) ALEMeshUpdater (class in thetis.utility3d) alpha (thetis.options.LinearEquationOfStateOptions attribute) (thetis.options.PacanowskiPhilanderModelOptions attribute) anisotropic_cell_size() (in module thetis.utility) apply() (thetis.assembledschur.AssembledSchurPC method) (thetis.limiter.VertexBasedP1DGLimiter method) apply_defaults() (thetis.options.GLSModelOptions method) apply_supg() (thetis.tracer_eq_2d.TracerEquation2D method) applyTranspose() (thetis.assembledschur.AssembledSchurPC method) AssembledSchurPC (class in thetis.assembledschur) assert_function_space() (in module thetis.limiter) assign_initial_conditions() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) ATMInterpolator (class in thetis.forcing) ATMNetCDFTime (class in thetis.forcing) atmospheric_pressure (thetis.options.CommonModelOptions attribute) AtmosphericPressureTerm (class in thetis.shallowwater_eq) attach_paired_options() (in module thetis.configuration) AttrDict (class in thetis.utility) average_sediment_size (thetis.options.SedimentModelOptions attribute)

B

b (thetis.rungekutta.AbstractRKScheme property) (thetis.rungekutta.BackwardEulerAbstract attribute) (thetis.rungekutta.CrankNicolsonAbstract attribute) (thetis.rungekutta.DIRK22Abstract attribute) (thetis.rungekutta.DIRK23Abstract attribute) (thetis.rungekutta.DIRK33Abstract attribute) (thetis.rungekutta.DIRK43Abstract attribute) (thetis.rungekutta.DIRKLPUM2Abstract attribute) (thetis.rungekutta.DIRKLSPUM2Abstract attribute) (thetis.rungekutta.ERKLPUM2Abstract attribute) (thetis.rungekutta.ERKLSPUM2Abstract attribute) (thetis.rungekutta.ERKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKTrapezoidAbstract attribute) (thetis.rungekutta.ForwardEulerAbstract attribute) (thetis.rungekutta.ImplicitMidpointAbstract attribute) (thetis.rungekutta.SSPRK33Abstract attribute) (thetis.utility3d.JackettEquationOfState attribute)

b1 (thetis.rungekutta.DIRK33Abstract attribute) b2 (thetis.rungekutta.DIRK33Abstract attribute) BackwardEuler (class in thetis.rungekutta) BackwardEulerAbstract (class in thetis.rungekutta) BackwardEulerUForm (class in thetis.rungekutta) BaseShallowWaterEquation (class in thetis.shallowwater_eq) bed_reference_height (thetis.options.SedimentModelOptions attribute) beta (thetis.options.LinearEquationOfStateOptions attribute) beta_plane_coriolis_function() (in module thetis.utility) beta_plane_coriolis_params() (in module thetis.utility) bottom_roughness (thetis.options.ModelOptions3d attribute) BottomDrag3DTerm (class in thetis.shallowwater_eq) BottomFrictionTerm (class in thetis.momentum_eq) BoundedFloat (class in thetis.configuration) BoundedInteger (class in thetis.configuration) break_even_wattage (thetis.options.TidalTurbineFarmOptions attribute) BuoyFrequencySolver (class in thetis.turbulence) butcher_to_shuosher_form() (in module thetis.rungekutta)

C

c (thetis.rungekutta.AbstractRKScheme property) (thetis.rungekutta.BackwardEulerAbstract attribute) (thetis.rungekutta.CrankNicolsonAbstract attribute) (thetis.rungekutta.DIRK22Abstract attribute) (thetis.rungekutta.DIRK23Abstract attribute) (thetis.rungekutta.DIRK33Abstract attribute) (thetis.rungekutta.DIRK43Abstract attribute) (thetis.rungekutta.DIRKLPUM2Abstract attribute) (thetis.rungekutta.DIRKLSPUM2Abstract attribute) (thetis.rungekutta.ERKLPUM2Abstract attribute) (thetis.rungekutta.ERKLSPUM2Abstract attribute) (thetis.rungekutta.ERKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKTrapezoidAbstract attribute) (thetis.rungekutta.ForwardEulerAbstract attribute) (thetis.rungekutta.ImplicitMidpointAbstract attribute) (thetis.rungekutta.SSPRK33Abstract attribute) c1 (thetis.options.GLSModelOptions attribute) c2 (thetis.options.GLSModelOptions attribute) c3_minus (thetis.options.GLSModelOptions attribute) c3_plus (thetis.options.GLSModelOptions attribute) C_support (thetis.options.TidalTurbineOptions attribute) callback() (thetis.optimisation.ControlsExportOptimisationCallback method) (thetis.optimisation.DerivativesExportOptimisationCallback method) (thetis.optimisation.DiagnosticOptimisationCallback method) (thetis.optimisation.OptimisationCallback method) (thetis.optimisation.OptimisationCallbackList method) (thetis.optimisation.UserExportOptimisationCallback method) CallbackManager (class in thetis.callback) callbacks (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute) cb1 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cb2 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cb3 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cb4 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cb5 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cbb (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc1 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc2 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc3 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc4 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc5 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cc6 (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) cfl_2d (thetis.options.CommonModelOptions attribute) cfl_3d (thetis.options.CommonModelOptions attribute) cfl_coeff (thetis.rungekutta.AbstractRKScheme property) (thetis.rungekutta.BackwardEulerAbstract attribute) (thetis.rungekutta.CrankNicolsonAbstract attribute) (thetis.rungekutta.DIRK22Abstract attribute) (thetis.rungekutta.DIRK23Abstract attribute) (thetis.rungekutta.DIRK33Abstract attribute) (thetis.rungekutta.DIRK43Abstract attribute) (thetis.rungekutta.DIRKGenericUForm attribute) (thetis.rungekutta.DIRKLPUM2Abstract attribute) (thetis.rungekutta.DIRKLSPUM2Abstract attribute) (thetis.rungekutta.ERKLPUM2Abstract attribute) (thetis.rungekutta.ERKLSPUM2Abstract attribute) (thetis.rungekutta.ERKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKMidpointAbstract attribute) (thetis.rungekutta.ESDIRKTrapezoidAbstract attribute) (thetis.rungekutta.ForwardEulerAbstract attribute) (thetis.rungekutta.ImplicitMidpointAbstract attribute) (thetis.rungekutta.SSPRK33Abstract attribute) (thetis.timeintegrator.CrankNicolson attribute) (thetis.timeintegrator.ForwardEuler attribute) (thetis.timeintegrator.LeapFrogAM3 attribute) (thetis.timeintegrator.PressureProjectionPicard attribute) (thetis.timeintegrator.SSPRK22ALE attribute) (thetis.timeintegrator.SteadyState attribute) check_salinity_conservation (thetis.options.ModelOptions3d attribute)

check_salinity_overshoot (thetis.options.ModelOptions3d attribute) check_sediment_conservation (thetis.options.SedimentModelOptions attribute) check_sediment_overshoot (thetis.options.SedimentModelOptions attribute) check_temperature_conservation (thetis.options.ModelOptions3d attribute) check_temperature_overshoot (thetis.options.ModelOptions3d attribute) check_tracer_conservation (thetis.options.ModelOptions2d attribute) check_tracer_overshoot (thetis.options.ModelOptions2d attribute) check_volume_conservation_2d (thetis.options.CommonModelOptions attribute) check_volume_conservation_3d (thetis.options.ModelOptions3d attribute) closure_name (thetis.options.GLSModelOptions attribute) cmu0 (thetis.options.GLSModelOptions attribute) CommonModelOptions (class in thetis.options) comp_tracer_mass_2d() (in module thetis.utility) comp_tracer_mass_3d() (in module thetis.utility) comp_volume_2d() (in module thetis.utility) comp_volume_3d() (in module thetis.utility) component() (thetis.tracer_eq_2d.TracerTerm method) compute_alpha_shear_steady() (thetis.stability_functions.StabilityFunctionBase method) compute_baroclinic_head() (in module thetis.utility) compute_boundary_length() (in module thetis.utility) compute_bounds() (thetis.limiter.VertexBasedP1DGLimiter method) compute_c3_minus (thetis.options.GLSModelOptions attribute) compute_c3_minus() (thetis.stability_functions.StabilityFunctionBase method) compute_cmu0 (thetis.options.GLSModelOptions attribute) compute_cmu0() (thetis.stability_functions.StabilityFunctionBase method) compute_dt_2d() (thetis.solver.FlowSolver method) compute_dt_diffusion() (thetis.solver.FlowSolver method) compute_dt_h_advection() (thetis.solver.FlowSolver method) compute_dt_v_advection() (thetis.solver.FlowSolver method) compute_dx_factor() (thetis.solver.FlowSolver method) compute_dz_factor() (thetis.solver.FlowSolver method) compute_elem_height() (in module thetis.utility) compute_galperin_clim (thetis.options.GLSModelOptions attribute) compute_kappa (thetis.options.GLSModelOptions attribute) compute_kappa() (thetis.stability_functions.StabilityFunctionBase method) compute_len_min (thetis.options.GLSModelOptions attribute) compute_length_clim() (thetis.stability_functions.StabilityFunctionBase method) compute_mesh_stats() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) compute_mesh_velocity() (thetis.coupled_timeintegrator.CoupledTwoStageRK method) compute_mesh_velocity_begin() (thetis.utility3d.ALEMeshUpdater method) compute_mesh_velocity_finalize() (thetis.utility3d.ALEMeshUpdater method) compute_normalized_frequencies() (in module thetis.stability_functions) compute_psi_min (thetis.options.GLSModelOptions attribute) compute_rho() (thetis.utility3d.EquationOfState method) (thetis.utility3d.JackettEquationOfState method) (thetis.utility3d.LinearEquationOfState method) compute_schmidt_nb_psi (thetis.options.GLSModelOptions attribute) compute_sigma_psi() (thetis.stability_functions.StabilityFunctionBase method) compute_time_step() (thetis.solver2d.FlowSolver2d method) compute_values() (thetis.optimisation.ConstantControlOptimisationCallback method) (thetis.optimisation.DerivativeConstantControlOptimisationCallback method) (thetis.optimisation.DiagnosticOptimisationCallback method) (thetis.optimisation.FunctionalOptimisationCallback method) (thetis.turbines.TurbineOptimisationCallback method) compute_velocity (thetis.forcing.FES2004TidalBoundaryForcing attribute) (thetis.forcing.TidalBoundaryForcing property) (thetis.forcing.TPXOTidalBoundaryForcing attribute) compute_wind_stress() (in module thetis.forcing) ConservativeHorizontalAdvectionTerm (class in thetis.tracer_eq_2d) ConservativeHorizontalDiffusionTerm (class in thetis.tracer_eq_2d) ConservativeSedimentAdvectionTerm (class in thetis.sediment_eq_2d) ConservativeSourceTerm (class in thetis.tracer_eq_2d) ConservativeTracerMassConservation2DCallback (class in thetis.callback) ConservativeTracerTerm (class in thetis.tracer_eq_2d) consistency_test() (thetis.inversion_tools.InversionManager method) constant_salinity (thetis.options.ModelOptions3d attribute) constant_temperature (thetis.options.ModelOptions3d attribute) ConstantControlOptimisationCallback (class in thetis.optimisation) ConstantThrustTurbine (class in thetis.turbines) ConstantTidalTurbineOptions (class in thetis.options) construct_evaluator() (thetis.inversion_tools.StationObservationManager method) ContinuitySourceTerm (class in thetis.shallowwater_eq) ControlRegularizationManager (class in thetis.inversion_tools) ControlsExportOptimisationCallback (class in thetis.optimisation) coord_layout (thetis.forcing.FES2004TidalBoundaryForcing attribute) (thetis.forcing.TidalBoundaryForcing property) (thetis.forcing.TPXOTidalBoundaryForcing attribute) CoordinateSystem (class in thetis.coordsys) coriolis_frequency (thetis.options.CommonModelOptions attribute) CoriolisTerm (class in thetis.momentum_eq) (class in thetis.shallowwater_eq) correct() (thetis.timeintegrator.LeapFrogAM3 method) CorrectiveVelocityFactor (class in thetis.sediment_model) CoupledLeapFrogAM3 (class in thetis.coupled_timeintegrator) CoupledTimeIntegrator (class in thetis.coupled_timeintegrator) CoupledTimeIntegrator2D (class in thetis.coupled_timeintegrator_2d) CoupledTimeIntegratorBase (class in thetis.coupled_timeintegrator) CoupledTwoStageRK (class in thetis.coupled_timeintegrator) CrankNicolson (class in thetis.timeintegrator) CrankNicolsonAbstract (class in thetis.rungekutta) CrankNicolsonRK (class in thetis.rungekutta) CrankNicolsonSWETimeStepperOptions2d (class in thetis.options) CrankNicolsonTracerTimeStepperOptions2d (class in thetis.options) create_directory() (in module thetis.utility) create_equations() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) create_exporters() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) create_fields() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) create_fields_old() (thetis.timeintegrator.TimeIntegrator method) create_function_spaces() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) create_timestepper() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) critical() (in module thetis.log)

D

DailyFileTimeSearch (class in thetis.interpolation) datetime_to_epoch() (in module thetis.timezone) DatetimeTraitlet (class in thetis.configuration) debug() (in module thetis.log) default_value (thetis.configuration.DatetimeTraitlet attribute) (thetis.configuration.FiredrakeCoefficient attribute) (thetis.configuration.FiredrakeConstantTraitlet attribute) (thetis.configuration.FiredrakeScalarExpression attribute) (thetis.configuration.FiredrakeVectorExpression attribute) default_value_repr() (thetis.configuration.FiredrakeCoefficient method) (thetis.configuration.FiredrakeConstantTraitlet method) (thetis.configuration.FiredrakeScalarExpression method) (thetis.configuration.FiredrakeVectorExpression method) DeferredExportManager (class in thetis.optimisation) density (thetis.diagnostics.KineticEnergyCalculator attribute) DensitySolver (class in thetis.utility3d) DensitySolverWeak (class in thetis.utility3d) DepthExpression (class in thetis.utility) DepthIntegratedPoissonSolver (class in thetis.utility) DerivativeConstantControlOptimisationCallback (class in thetis.optimisation) DerivativesExportOptimisationCallback (class in thetis.optimisation) DetectorsCallback (class in thetis.callback) DiagnosticCallback (class in thetis.callback) DiagnosticHDF5 (class in thetis.callback) DiagnosticOptimisationCallback (class in thetis.optimisation) diameter (thetis.options.TidalTurbineOptions attribute) diff_min (thetis.options.GLSModelOptions attribute) diffusivity (thetis.options.TracerFieldOptions attribute)

DIRK22 (class in thetis.rungekutta) DIRK22Abstract (class in thetis.rungekutta) DIRK22UForm (class in thetis.rungekutta) DIRK23 (class in thetis.rungekutta) DIRK23Abstract (class in thetis.rungekutta) DIRK33 (class in thetis.rungekutta) DIRK33Abstract (class in thetis.rungekutta) DIRK33UForm (class in thetis.rungekutta) DIRK43 (class in thetis.rungekutta) DIRK43Abstract (class in thetis.rungekutta) dirk_class (thetis.implicitexplicit.IMEXEuler attribute) (thetis.implicitexplicit.IMEXGeneric property) (thetis.implicitexplicit.IMEXLPUM2 attribute) (thetis.implicitexplicit.IMEXLSPUM2 attribute) (thetis.implicitexplicit.IMEXMidpoint attribute) DIRKGeneric (class in thetis.rungekutta) DIRKGenericUForm (class in thetis.rungekutta) DIRKLPUM2 (class in thetis.rungekutta) DIRKLPUM2Abstract (class in thetis.rungekutta) DIRKLSPUM2 (class in thetis.rungekutta) DIRKLSPUM2Abstract (class in thetis.rungekutta) discrete_tidal_turbine_farms (thetis.options.ModelOptions2d attribute) DiscreteTidalTurbineFarm (class in thetis.turbines) DiscreteTidalTurbineFarmOptions (class in thetis.options) dt (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute) dt_2d (thetis.solver.FlowSolver attribute) dump_time_series() (thetis.inversion_tools.StationObservationManager method)

E

element_continuity() (in module thetis.utility) element_family (thetis.options.CommonModelOptions attribute) ElementContinuity (class in thetis.utility) elev_nc_file (thetis.forcing.FES2004TidalBoundaryForcing attribute) ensure_positive_salinity() (thetis.utility3d.DensitySolverWeak method) epoch_to_datetime() (in module thetis.timezone) eps_min (thetis.options.GLSModelOptions attribute) Equation (class in thetis.equation) equation_of_state_options (thetis.options.ModelOptions3d attribute) equation_of_state_type (thetis.options.ModelOptions3d attribute) EquationOfState (class in thetis.utility3d) EquationOfStateOptions (class in thetis.options) erk_class (thetis.implicitexplicit.IMEXEuler attribute) (thetis.implicitexplicit.IMEXGeneric property) (thetis.implicitexplicit.IMEXLPUM2 attribute) (thetis.implicitexplicit.IMEXLSPUM2 attribute) (thetis.implicitexplicit.IMEXMidpoint attribute) ERKEuler (class in thetis.rungekutta) ERKGeneric (class in thetis.rungekutta) ERKGenericShuOsher (class in thetis.rungekutta) ERKLPUM2 (class in thetis.rungekutta) ERKLPUM2Abstract (class in thetis.rungekutta) ERKLSPUM2 (class in thetis.rungekutta) ERKLSPUM2Abstract (class in thetis.rungekutta) ERKMidpoint (class in thetis.rungekutta) ERKMidpointAbstract (class in thetis.rungekutta) error() (in module thetis.log) ESDIRKMidpoint (class in thetis.rungekutta) ESDIRKMidpointAbstract (class in thetis.rungekutta) ESDIRKTrapezoid (class in thetis.rungekutta) ESDIRKTrapezoidAbstract (class in thetis.rungekutta) eval() (thetis.utility3d.EquationOfState method) (thetis.utility3d.JackettEquationOfState method) (thetis.utility3d.LinearEquationOfState method) eval_cost_function() (thetis.inversion_tools.ControlRegularizationManager method) (thetis.inversion_tools.HessianRegularizationCalculator method) (thetis.inversion_tools.RegularizationCalculator method) (thetis.inversion_tools.StationObservationManager method) eval_funcs() (thetis.stability_functions.StabilityFunctionBase method) eval_observation_at_time() (thetis.inversion_tools.StationObservationManager method)

eval_rhs() (thetis.timeintegrator.LeapFrogAM3 method) evaluate() (thetis.callback.CallbackManager method) (thetis.callback.DiagnosticCallback method) (thetis.optimisation.DiagnosticOptimisationCallback method) (thetis.stability_functions.StabilityFunctionBase method) exner_integrator() (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) exner_timestepper_options (thetis.options.SedimentModelOptions attribute) exner_timestepper_type (thetis.options.SedimentModelOptions attribute) ExnerBedloadTerm (class in thetis.exner_eq) ExnerEquation (class in thetis.exner_eq) ExnerSourceTerm (class in thetis.exner_eq) ExnerTerm (class in thetis.exner_eq) ExpandFunctionTo3d (class in thetis.utility3d) explicit_momentum_options (thetis.options.SSPRKTimeStepperOptions3d attribute) explicit_tracer_options (thetis.options.SSPRKTimeStepperOptions3d attribute) ExplicitMomentumTimeStepperOptions3d (class in thetis.options) ExplicitSWETimeStepperOptions2d (class in thetis.options) ExplicitTimeStepperOptions (class in thetis.options) ExplicitTimeStepperOptions2d (class in thetis.options) ExplicitTracerTimeStepperOptions2d (class in thetis.options) ExplicitTracerTimeStepperOptions3d (class in thetis.options) exponent (thetis.options.PacanowskiPhilanderModelOptions attribute) export() (thetis.callback.DiagnosticHDF5 method) (thetis.exporter.ExporterBase method) (thetis.exporter.ExportManager method) (thetis.exporter.HDF5Exporter method) (thetis.exporter.VTKExporter method) (thetis.optimisation.DeferredExportManager method) (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) export_as_index() (thetis.exporter.HDF5Exporter method) export_bathymetry() (thetis.exporter.ExportManager method) export_diagnostics (thetis.options.CommonModelOptions attribute) export_initial_state (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute) ExporterBase (class in thetis.exporter) ExportManager (class in thetis.exporter) extend_function_to_3d() (in module thetis.utility) ExternalPressureGradientTerm (class in thetis.shallowwater_eq) extrude_mesh_sigma() (in module thetis.utility) ExtrudedFunction (class in thetis.utility)

F

f_wall (thetis.options.GLSModelOptions attribute) FES2004TidalBoundaryForcing (class in thetis.forcing) field_2d (thetis.diagnostics.HessianRecoverer2D attribute) field_metadata (in module thetis.field_defs) FieldDict (class in thetis.utility) fields (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute) fields_to_export (thetis.options.CommonModelOptions attribute) fields_to_export_hdf5 (thetis.options.CommonModelOptions attribute) FileTreeReader (class in thetis.interpolation) find() (thetis.interpolation.DailyFileTimeSearch method) (thetis.interpolation.NetCDFTimeSearch method) (thetis.interpolation.TimeSearch method) find_time_stamp() (thetis.interpolation.NetCDFTimeParser method) (thetis.interpolation.TimeParser method) FiredrakeCoefficient (class in thetis.configuration) FiredrakeConstantTraitlet (class in thetis.configuration) FiredrakeScalarExpression (class in thetis.configuration) FiredrakeVectorExpression (class in thetis.configuration) FixedTimeZone (class in thetis.timezone)

FlowSolver (class in thetis.solver) FlowSolver2d (class in thetis.solver2d) form (thetis.diagnostics.ShallowWaterDualWeightedResidual2D property) (thetis.diagnostics.TracerDualWeightedResidual2D property) form2indicator() (in module thetis.utility) ForwardEuler (class in thetis.timeintegrator) ForwardEulerAbstract (class in thetis.rungekutta) free_surface_timestepper_options (thetis.options.NonhydrostaticModelOptions attribute) free_surface_timestepper_type (thetis.options.NonhydrostaticModelOptions attribute) FreeSurfaceEquation (class in thetis.shallowwater_eq) friction_coefficient() (thetis.turbines.TidalTurbine method) (thetis.turbines.TidalTurbineFarm method) FrozenClass (class in thetis.utility) FrozenConfigurable (class in thetis.configuration) FrozenHasTraits (class in thetis.configuration) function (thetis.options.TracerFieldOptions attribute) function() (thetis.turbines.MinimumDistanceConstraints method) function_spaces (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute) FunctionalOptimisationCallback (class in thetis.optimisation)

G

galperin_clim (thetis.options.GLSModelOptions attribute) gamma (thetis.rungekutta.DIRK22Abstract attribute) (thetis.rungekutta.DIRK23Abstract attribute) (thetis.rungekutta.DIRK33Abstract attribute) gen_filename() (thetis.exporter.HDF5Exporter method) GeneralCoupledTimeIntegrator2D (class in thetis.coupled_timeintegrator_2d) GenericInterpolator2D (class in thetis.forcing) GenericLengthScaleModel (class in thetis.turbulence) GenericSpatialInterpolator2D (class in thetis.forcing) get_advective_velocity_correction_factor() (thetis.sediment_model.SedimentModel method) get_alpha_buoy_min() (thetis.stability_functions.StabilityFunctionBase method) get_alpha_buoy_smooth_min() (thetis.stability_functions.StabilityFunctionBase method) get_alpha_shear_max() (thetis.stability_functions.StabilityFunctionBase method) get_bedload_term() (thetis.sediment_model.SedimentModel method) get_bnd_functions() (thetis.sediment_eq_2d.SedimentTerm method) (thetis.shallowwater_eq.ShallowWaterTerm method) (thetis.tracer_eq.TracerTerm method) (thetis.tracer_eq_2d.TracerTerm method) get_cell_widths_2d() (in module thetis.utility) get_cost_function() (thetis.inversion_tools.InversionManager method) get_deposition_coefficient() (thetis.sediment_model.SedimentModel method) get_end_time() (thetis.interpolation.NetCDFTimeParser method) (thetis.interpolation.TimeParser method) get_equilibrium_tracer() (thetis.sediment_model.SedimentModel method) get_erosion_term() (thetis.sediment_model.SedimentModel method) get_exner_timestepper() (thetis.solver2d.FlowSolver2d method) get_extruded_base_element() (in module thetis.utility) get_facet_areas() (in module thetis.utility) get_facet_mask() (in module thetis.utility) get_final_solution() (thetis.implicitexplicit.IMEXGeneric method) (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.DIRKGenericUForm method) (thetis.rungekutta.ERKGeneric method) (thetis.rungekutta.RungeKuttaTimeIntegrator method)

get_fs_timestepper() (thetis.solver2d.FlowSolver2d method) get_functionspace() (in module thetis.utility) get_horizontal_elem_size_2d() (in module thetis.utility) get_horizontal_elem_size_3d() (in module thetis.utility3d) get_mesh_lonlat_function() (thetis.coordsys.UTMCoordinateSystem method) get_minimum_angles_2d() (in module thetis.utility) get_ncvar_name() (in module thetis.interpolation) get_optimization_callback() (thetis.inversion_tools.InversionManager method) get_sediment_slide_term() (thetis.sediment_model.SedimentModel method) get_sediment_timestepper() (thetis.solver2d.FlowSolver2d method) get_start_time() (thetis.interpolation.NetCDFTimeParser method) (thetis.interpolation.TimeParser method) get_sum() (thetis.utility.SumFunction method) get_swe_timestepper() (thetis.solver2d.FlowSolver2d method) get_total_depth() (thetis.utility.DepthExpression method) get_tracer_timestepper() (thetis.solver2d.FlowSolver2d method) get_val() (thetis.callback.AccumulatorCallback method) get_vector_rotation_matrix() (in module thetis.coordsys) get_vector_rotator() (thetis.coordsys.CoordinateSystem method) (thetis.coordsys.UTMCoordinateSystem method) get_visu_space() (in module thetis.exporter) get_zcoord_from_mesh() (in module thetis.utility) GLSModelOptions (class in thetis.options) GLSVerticalDiffusionTerm (class in thetis.turbulence) GOTMStabilityFunctionCanutoA (class in thetis.stability_functions) GOTMStabilityFunctionCanutoB (class in thetis.stability_functions) GOTMStabilityFunctionCheng (class in thetis.stability_functions) GOTMStabilityFunctionKanthaClayson (class in thetis.stability_functions) grid_nc_file (thetis.forcing.FES2004TidalBoundaryForcing attribute) GridInterpolator (class in thetis.interpolation)

H

HDF5Exporter (class in thetis.exporter) HessianRecoverer2D (class in thetis.diagnostics) HessianRegularizationCalculator (class in thetis.inversion_tools) horizontal (thetis.utility.ElementContinuity attribute) horizontal_diffusivity (thetis.options.ModelOptions3d attribute) (thetis.options.SedimentModelOptions attribute) horizontal_diffusivity_scale (thetis.options.CommonModelOptions attribute) horizontal_velocity_scale (thetis.options.CommonModelOptions attribute) horizontal_viscosity (thetis.options.CommonModelOptions attribute)

horizontal_viscosity_scale (thetis.options.CommonModelOptions attribute) HorizontalAdvectionTerm (class in thetis.momentum_eq) (class in thetis.shallowwater_eq) (class in thetis.tracer_eq) (class in thetis.tracer_eq_2d) HorizontalDiffusionTerm (class in thetis.tracer_eq) (class in thetis.tracer_eq_2d) HorizontalViscosityTerm (class in thetis.momentum_eq) (class in thetis.shallowwater_eq) HUDivTerm (class in thetis.shallowwater_eq)

I

IMEXEuler (class in thetis.implicitexplicit) IMEXGeneric (class in thetis.implicitexplicit) IMEXLPUM2 (class in thetis.implicitexplicit) IMEXLSPUM2 (class in thetis.implicitexplicit) IMEXMidpoint (class in thetis.implicitexplicit) IMEXSWETimeStepperOptions2d (class in thetis.options) implicit_momentum_options (thetis.options.SSPRKTimeStepperOptions3d attribute) implicit_tracer_options (thetis.options.SSPRKTimeStepperOptions3d attribute) ImplicitMidpoint (class in thetis.rungekutta) ImplicitMidpointAbstract (class in thetis.rungekutta) ImplicitMomentumTimeStepperOptions3d (class in thetis.options) implicitness_theta (thetis.options.CrankNicolsonSWETimeStepperOptions2d attribute) (thetis.options.CrankNicolsonTracerTimeStepperOptions2d attribute) (thetis.options.ImplicitSWETimeStepperOptions3d attribute) (thetis.options.PressureProjectionSWETimeStepperOptions2d attribute) ImplicitSWETimeStepperOptions3d (class in thetis.options) ImplicitTracerTimeStepperOptions3d (class in thetis.options) impose_dynamic_bnd() (thetis.shallowwater_eq.ShallowWaterTerm method) indent() (in module thetis.configuration) info() (in module thetis.log) (thetis.configuration.BoundedFloat method) (thetis.configuration.BoundedInteger method) (thetis.configuration.NonNegativeFloat method) (thetis.configuration.NonNegativeInteger method) (thetis.configuration.PairedEnum method) (thetis.configuration.PositiveFloat method) (thetis.configuration.PositiveInteger method) info_text (thetis.configuration.DatetimeTraitlet attribute) (thetis.configuration.FiredrakeCoefficient attribute) (thetis.configuration.FiredrakeConstantTraitlet attribute) (thetis.configuration.FiredrakeScalarExpression attribute) (thetis.configuration.FiredrakeVectorExpression attribute) (thetis.configuration.PETScSolverParameters attribute) initialize() (thetis.assembledschur.AssembledSchurPC method) (thetis.coupled_timeintegrator.CoupledTimeIntegrator method) (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) (thetis.coupled_timeintegrator_2d.NonHydrostaticTimeIntegrator2D method) (thetis.implicitexplicit.IMEXGeneric method) (thetis.inversion_tools.InversionManager method) (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.DIRKGenericUForm method) (thetis.rungekutta.ERKGeneric method) (thetis.rungekutta.ERKGenericShuOsher method) (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) (thetis.timeintegrator.CrankNicolson method) (thetis.timeintegrator.ForwardEuler method) (thetis.timeintegrator.LeapFrogAM3 method) (thetis.timeintegrator.PressureProjectionPicard method) (thetis.timeintegrator.SSPRK22ALE method) (thetis.timeintegrator.SteadyState method) (thetis.timeintegrator.TimeIntegratorBase method) (thetis.turbulence.GenericLengthScaleModel method) (thetis.turbulence.PacanowskiPhilanderModel method) (thetis.turbulence.TurbulenceModel method) (thetis.utility3d.ALEMeshUpdater method)

integrator_2d (thetis.coupled_timeintegrator.CoupledLeapFrogAM3 attribute) (thetis.coupled_timeintegrator.CoupledTimeIntegrator property) (thetis.coupled_timeintegrator.CoupledTwoStageRK attribute) integrator_3d (thetis.coupled_timeintegrator.CoupledLeapFrogAM3 attribute) (thetis.coupled_timeintegrator.CoupledTimeIntegrator property) (thetis.coupled_timeintegrator.CoupledTwoStageRK attribute) integrator_vert_3d (thetis.coupled_timeintegrator.CoupledLeapFrogAM3 attribute) (thetis.coupled_timeintegrator.CoupledTimeIntegrator property) (thetis.coupled_timeintegrator.CoupledTwoStageRK attribute) internal_pg_scalar (thetis.options.ModelOptions3d attribute) InternalPressureGradientCalculator (class in thetis.momentum_eq) interpolate() (thetis.forcing.GenericSpatialInterpolator2D method) (thetis.forcing.SpatialInterpolatorNCOM2d method) (thetis.forcing.SpatialInterpolatorNCOM3d method) (thetis.forcing.SpatialInterpolatorROMS3d method) (thetis.interpolation.NetCDFLatLonInterpolator2d method) (thetis.interpolation.SpatialInterpolator method) (thetis.interpolation.SpatialInterpolator2d method) InversionManager (class in thetis.inversion_tools) is_2d() (in module thetis.exporter) iterate() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method)

J

JackettEquationOfState (class in thetis.utility3d) jacobian() (thetis.equation.Equation method) (thetis.equation.Term method) (thetis.turbines.MinimumDistanceConstraints method)

K

k_min (thetis.options.GLSModelOptions attribute)

kappa (thetis.options.GLSModelOptions attribute) KineticEnergyCalculator (class in thetis.diagnostics)

L

l1 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l2 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l3 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l4 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l5 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l6 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l7 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) l8 (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute)

label_term() (thetis.equation.Equation method) lax_friedrichs_tracer_scaling_factor (thetis.options.CommonModelOptions attribute) lax_friedrichs_velocity_scaling_factor (thetis.options.CommonModelOptions attribute) LeapFrogAM3 (class in thetis.timeintegrator) LeapFrogTimeStepperOptions3d (class in thetis.options) len_min (thetis.options.GLSModelOptions attribute) length() (thetis.turbines.MinimumDistanceConstraints method) limit_eps (thetis.options.GLSModelOptions attribute) limit_len (thetis.options.GLSModelOptions attribute) limit_len_min (thetis.options.GLSModelOptions attribute) limit_psi (thetis.options.GLSModelOptions attribute) linear_drag_coefficient (thetis.options.CommonModelOptions attribute) LinearDragTerm (class in thetis.momentum_eq) (class in thetis.shallowwater_eq) LinearEquationOfState (class in thetis.utility3d) LinearEquationOfStateOptions (class in thetis.options) linearly_interpolate_table() (in module thetis.turbines) LinearTimeInterpolator (class in thetis.interpolation) LiveOceanInterpolator (class in thetis.forcing) load() (thetis.exporter.HDF5Exporter method) load_observation_data() (thetis.inversion_tools.StationObservationManager method) load_state() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) log() (in module thetis.log) log_output (thetis.options.CommonModelOptions attribute)

M

m (thetis.options.GLSModelOptions attribute) M_modesplit (thetis.solver.FlowSolver attribute) manning_drag_coefficient (thetis.options.CommonModelOptions attribute) mass_term() (thetis.equation.Equation method) (thetis.shallowwater_eq.FreeSurfaceEquation method) (thetis.shallowwater_eq.ShallowWaterEquations method) max_angle (thetis.options.SedimentModelOptions attribute) max_viscosity (thetis.options.PacanowskiPhilanderModelOptions attribute) mesh (thetis.solver.FlowSolver attribute) mesh2d (thetis.solver.FlowSolver attribute) Mesh3DConsistencyCalculator (class in thetis.utility3d) message_str() (thetis.callback.AccumulatorCallback method) (thetis.callback.DetectorsCallback method) (thetis.callback.DiagnosticCallback method) (thetis.callback.MinMaxConservationCallback method) (thetis.callback.ScalarConservationCallback method) (thetis.callback.TimeSeriesCallback2D method) (thetis.callback.TimeSeriesCallback3D method) (thetis.callback.TransectCallback method) (thetis.callback.VerticalProfileCallback method) (thetis.optimisation.ConstantControlOptimisationCallback method) (thetis.optimisation.DerivativeConstantControlOptimisationCallback method) (thetis.optimisation.FunctionalOptimisationCallback method) (thetis.turbines.TurbineFunctionalCallback method) (thetis.turbines.TurbineOptimisationCallback method) metadata (thetis.options.TracerFieldOptions attribute) minimize() (thetis.inversion_tools.InversionManager method) MinimumDistanceConstraints (class in thetis.turbines) MinMaxConservationCallback (class in thetis.callback) ModelOptions2d (class in thetis.options) ModelOptions3d (class in thetis.options) ModeSplit2DEquations (class in thetis.shallowwater_eq) module thetis thetis.assembledschur thetis.callback thetis.configuration thetis.coordsys thetis.coupled_timeintegrator thetis.coupled_timeintegrator_2d thetis.diagnostics thetis.equation thetis.exner_eq thetis.exporter thetis.field_defs thetis.forcing thetis.implicitexplicit thetis.interpolation thetis.inversion_tools thetis.limiter thetis.log thetis.momentum_eq thetis.optimisation thetis.options thetis.physical_constants thetis.rungekutta thetis.sediment_eq_2d thetis.sediment_model thetis.shallowwater_eq thetis.solver thetis.solver2d thetis.stability_functions thetis.timeintegrator thetis.timezone thetis.tracer_eq thetis.tracer_eq_2d thetis.turbines thetis.turbulence thetis.utility thetis.utility3d

momentum_source_2d (thetis.options.CommonModelOptions attribute) momentum_source_3d (thetis.options.ModelOptions3d attribute) MomentumEquation (class in thetis.momentum_eq) MomentumSourceTerm (class in thetis.shallowwater_eq) MomentumTerm (class in thetis.momentum_eq) morphological_acceleration_factor (thetis.options.SedimentModelOptions attribute) morphological_viscosity (thetis.options.SedimentModelOptions attribute)

N

n (thetis.options.GLSModelOptions attribute) name (thetis.callback.ConservativeTracerMassConservation2DCallback attribute) (thetis.callback.DetectorsCallback property) (thetis.callback.DiagnosticCallback property) (thetis.callback.TimeSeriesCallback2D attribute) (thetis.callback.TimeSeriesCallback3D attribute) (thetis.callback.TracerMassConservation2DCallback attribute) (thetis.callback.TracerMassConservationCallback attribute) (thetis.callback.TracerOvershootCallBack attribute) (thetis.callback.TransectCallback attribute) (thetis.callback.VerticalProfileCallback attribute) (thetis.callback.VolumeConservation2DCallback attribute) (thetis.callback.VolumeConservation3DCallback attribute) (thetis.configuration.OptionsBase property) (thetis.optimisation.ConstantControlOptimisationCallback attribute) (thetis.optimisation.DerivativeConstantControlOptimisationCallback attribute) (thetis.optimisation.FunctionalOptimisationCallback attribute) (thetis.options.CommonModelOptions attribute) (thetis.options.ConstantTidalTurbineOptions attribute) (thetis.options.DiscreteTidalTurbineFarmOptions attribute) (thetis.options.EquationOfStateOptions attribute) (thetis.options.GLSModelOptions attribute) (thetis.options.LinearEquationOfStateOptions attribute) (thetis.options.ModelOptions2d attribute) (thetis.options.ModelOptions3d attribute) (thetis.options.NonhydrostaticModelOptions attribute) (thetis.options.PacanowskiPhilanderModelOptions attribute) (thetis.options.TabulatedTidalTurbineOptions attribute) (thetis.options.TidalTurbineFarmOptions attribute) (thetis.options.TidalTurbineOptions attribute) (thetis.options.TimeStepperOptions attribute) (thetis.options.TracerFieldOptions attribute) (thetis.options.TurbulenceModelOptions attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoA attribute) (thetis.stability_functions.GOTMStabilityFunctionCanutoB attribute) (thetis.stability_functions.GOTMStabilityFunctionCheng attribute) (thetis.stability_functions.GOTMStabilityFunctionKanthaClayson attribute) (thetis.stability_functions.StabilityFunctionBase property) (thetis.stability_functions.StabilityFunctionCanutoA attribute) (thetis.stability_functions.StabilityFunctionCanutoB attribute) (thetis.stability_functions.StabilityFunctionCheng attribute) (thetis.turbines.TurbineFunctionalCallback attribute) (thetis.turbines.TurbineOptimisationCallback attribute)

NCOMInterpolator (class in thetis.forcing) NetCDFLatLonInterpolator2d (class in thetis.interpolation) NetCDFSpatialInterpolator (class in thetis.interpolation) NetCDFTimeParser (class in thetis.interpolation) NetCDFTimeSearch (class in thetis.interpolation) NetCDFTimeSeriesInterpolator (class in thetis.interpolation) NetCDFTimeSeriesReader (class in thetis.interpolation) nh_model_options (thetis.options.CommonModelOptions attribute) nikuradse_bed_roughness (thetis.options.CommonModelOptions attribute) no_exports (thetis.options.CommonModelOptions attribute) NonhydrostaticModelOptions (class in thetis.options) NonHydrostaticTimeIntegrator2D (class in thetis.coupled_timeintegrator_2d) NonNegativeFloat (class in thetis.configuration) NonNegativeInteger (class in thetis.configuration) norm_smoother (thetis.options.CommonModelOptions attribute) number_of_turbines() (thetis.turbines.TidalTurbineFarm method)

O

OptimisationCallback (class in thetis.optimisation) OptimisationCallbackList (class in thetis.optimisation) options (thetis.solver.FlowSolver attribute) (thetis.solver2d.FlowSolver2d attribute)

OptionsBase (class in thetis.configuration) output_directory (thetis.options.CommonModelOptions attribute)

P

p (thetis.options.GLSModelOptions attribute) PacanowskiPhilanderModel (class in thetis.turbulence) PacanowskiPhilanderModelOptions (class in thetis.options) PairedEnum (class in thetis.configuration) PETScSolverParameters (class in thetis.configuration) picard_iterations (thetis.options.PressureProjectionSWETimeStepperOptions2d attribute) polynomial_degree (thetis.options.CommonModelOptions attribute) porosity (thetis.options.SedimentModelOptions attribute) PositiveFloat (class in thetis.configuration) PositiveInteger (class in thetis.configuration) postprocess() (thetis.turbulence.GenericLengthScaleModel method) (thetis.turbulence.PacanowskiPhilanderModel method) (thetis.turbulence.TurbulenceModel method) power() (thetis.turbines.TidalTurbine method) power_output() (thetis.turbines.TidalTurbineFarm method) predict() (thetis.timeintegrator.LeapFrogAM3 method) prepare_stage() (thetis.timeintegrator.SSPRK22ALE method) preprocess() (thetis.turbulence.GenericLengthScaleModel method) (thetis.turbulence.PacanowskiPhilanderModel method) (thetis.turbulence.TurbulenceModel method)

PressureGradientTerm (class in thetis.momentum_eq) PressureProjectionPicard (class in thetis.timeintegrator) PressureProjectionSWETimeStepperOptions2d (class in thetis.options) print_debug() (thetis.turbulence.GenericLengthScaleModel method) print_function_value_range() (in module thetis.utility) print_output() (in module thetis.log) print_state() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) print_state_debug() (thetis.solver.FlowSolver method) proj_transform() (in module thetis.coordsys) project() (thetis.utility.SubdomainProjector method) psi_min (thetis.options.GLSModelOptions attribute) PsiEquation (class in thetis.turbulence) PsiSourceTerm (class in thetis.turbulence) push_to_hdf5() (thetis.callback.DiagnosticCallback method) push_to_log() (thetis.callback.DiagnosticCallback method)

Q

q_degree (thetis.options.NonhydrostaticModelOptions attribute) quadratic_drag_coefficient (thetis.options.CommonModelOptions attribute)

QuadraticDragTerm (class in thetis.shallowwater_eq) quadrature_degree (thetis.options.DiscreteTidalTurbineFarmOptions attribute)

R

read_mesh_from_checkpoint() (in module thetis.utility) reduced_functional (thetis.inversion_tools.InversionManager property) register_observation_data() (thetis.inversion_tools.StationObservationManager method) RegularizationCalculator (class in thetis.inversion_tools) reset_counters() (thetis.inversion_tools.InversionManager method) residual() (thetis.equation.Equation method) (thetis.equation.Term method) (thetis.exner_eq.ExnerBedloadTerm method) (thetis.exner_eq.ExnerSourceTerm method) (thetis.momentum_eq.BottomFrictionTerm method) (thetis.momentum_eq.CoriolisTerm method) (thetis.momentum_eq.HorizontalAdvectionTerm method) (thetis.momentum_eq.HorizontalViscosityTerm method) (thetis.momentum_eq.InternalPressureGradientCalculator method) (thetis.momentum_eq.LinearDragTerm method) (thetis.momentum_eq.PressureGradientTerm method) (thetis.momentum_eq.SourceTerm method) (thetis.momentum_eq.VerticalAdvectionTerm method) (thetis.momentum_eq.VerticalViscosityTerm method) (thetis.sediment_eq_2d.SedimentDepositionTerm method) (thetis.sediment_eq_2d.SedimentErosionTerm method) (thetis.shallowwater_eq.AtmosphericPressureTerm method) (thetis.shallowwater_eq.BottomDrag3DTerm method) (thetis.shallowwater_eq.ContinuitySourceTerm method) (thetis.shallowwater_eq.CoriolisTerm method) (thetis.shallowwater_eq.ExternalPressureGradientTerm method) (thetis.shallowwater_eq.FreeSurfaceEquation method) (thetis.shallowwater_eq.HorizontalAdvectionTerm method) (thetis.shallowwater_eq.HorizontalViscosityTerm method) (thetis.shallowwater_eq.HUDivTerm method) (thetis.shallowwater_eq.LinearDragTerm method) (thetis.shallowwater_eq.ModeSplit2DEquations method) (thetis.shallowwater_eq.MomentumSourceTerm method) (thetis.shallowwater_eq.QuadraticDragTerm method) (thetis.shallowwater_eq.ShallowWaterEquations method) (thetis.shallowwater_eq.ShallowWaterMomentumEquation method) (thetis.shallowwater_eq.WindStressTerm method) (thetis.tracer_eq.HorizontalAdvectionTerm method) (thetis.tracer_eq.HorizontalDiffusionTerm method) (thetis.tracer_eq.SourceTerm method) (thetis.tracer_eq.VerticalAdvectionTerm method) (thetis.tracer_eq.VerticalDiffusionTerm method) (thetis.tracer_eq_2d.ConservativeHorizontalAdvectionTerm method) (thetis.tracer_eq_2d.ConservativeSourceTerm method) (thetis.tracer_eq_2d.HorizontalAdvectionTerm method) (thetis.tracer_eq_2d.HorizontalDiffusionTerm method) (thetis.tracer_eq_2d.SourceTerm method) (thetis.turbulence.GLSVerticalDiffusionTerm method) (thetis.turbulence.PsiSourceTerm method) (thetis.turbulence.TKESourceTerm method)

residual_uv_eta() (thetis.shallowwater_eq.BaseShallowWaterEquation method) rf_kwargs (thetis.inversion_tools.InversionManager property) rho_ref (thetis.options.LinearEquationOfStateOptions attribute) ri_st (thetis.options.GLSModelOptions attribute) RSpaceRegularizationCalculator (class in thetis.inversion_tools) rst_all_options() (in module thetis.configuration) RungeKuttaTimeIntegrator (class in thetis.rungekutta)

S

s_ref (thetis.options.LinearEquationOfStateOptions attribute) salinity_source_3d (thetis.options.ModelOptions3d attribute) ScalarConservationCallback (class in thetis.callback) schmidt_nb_psi (thetis.options.GLSModelOptions attribute) schmidt_nb_tke (thetis.options.GLSModelOptions attribute) secondary_current_parameter (thetis.options.SedimentModelOptions attribute) sed_slide_length_scale (thetis.options.SedimentModelOptions attribute) sediment_density (thetis.options.SedimentModelOptions attribute) sediment_model (thetis.solver2d.FlowSolver2d attribute) sediment_model_class (thetis.options.SedimentModelOptions attribute) sediment_model_options (thetis.options.ModelOptions2d attribute) sediment_timestepper_options (thetis.options.SedimentModelOptions attribute) sediment_timestepper_type (thetis.options.SedimentModelOptions attribute) SedimentAdvectionTerm (class in thetis.sediment_eq_2d) SedimentDepositionTerm (class in thetis.sediment_eq_2d) SedimentEquation2D (class in thetis.sediment_eq_2d) SedimentErosionTerm (class in thetis.sediment_eq_2d) SedimentModel (class in thetis.sediment_model) SedimentModelOptions (class in thetis.options) SedimentTerm (class in thetis.sediment_eq_2d) select_and_move_detectors() (in module thetis.utility) select_terms() (thetis.equation.Equation method) SemiImplicitSWETimeStepperOptions2d (class in thetis.options) SemiImplicitTimeStepperOptions2d (class in thetis.options) SemiImplicitTracerTimeStepperOptions2d (class in thetis.options) set_control_state() (thetis.inversion_tools.InversionManager method) set_dt() (thetis.coupled_timeintegrator.CoupledTimeIntegrator method) (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) (thetis.implicitexplicit.IMEXGeneric method) (thetis.timeintegrator.TimeIntegrator method) set_fields() (thetis.forcing.ATMInterpolator method) (thetis.forcing.GenericInterpolator2D method) (thetis.forcing.LiveOceanInterpolator method) (thetis.forcing.NCOMInterpolator method) set_func_max_val() (in module thetis.turbulence) set_func_min_val() (in module thetis.turbulence) set_initial_state() (thetis.inversion_tools.InversionManager method) set_log_directory() (in module thetis.log) set_model_field() (thetis.inversion_tools.StationObservationManager method) set_next_export_ix() (thetis.exporter.ExporterBase method) (thetis.exporter.ExportManager method) (thetis.exporter.VTKExporter method) set_thetis_loggers() (in module thetis.log) set_tidal_field() (thetis.forcing.TidalBoundaryForcing method) set_time_step() (thetis.solver.FlowSolver method) (thetis.solver2d.FlowSolver2d method) set_timestepper_type() (thetis.options.ModelOptions2d method) set_wetting_and_drying_alpha() (thetis.solver2d.FlowSolver2d method) set_write_mode() (thetis.callback.DiagnosticCallback method) ShallowWaterContinuityTerm (class in thetis.shallowwater_eq) ShallowWaterDualWeightedResidual2D (class in thetis.diagnostics) ShallowWaterEquations (class in thetis.shallowwater_eq) ShallowWaterMomentumEquation (class in thetis.shallowwater_eq) ShallowWaterMomentumTerm (class in thetis.shallowwater_eq) ShallowWaterTerm (class in thetis.shallowwater_eq) ShearFrequencySolver (class in thetis.turbulence) simulation_end_date (thetis.options.CommonModelOptions attribute) simulation_end_time (thetis.options.CommonModelOptions attribute) simulation_export_time (thetis.options.CommonModelOptions attribute) simulation_initial_date (thetis.options.CommonModelOptions attribute) simulation_time_to_datetime() (thetis.interpolation.DailyFileTimeSearch method) (thetis.interpolation.NetCDFTimeSearch method) sipg_factor (thetis.options.CommonModelOptions attribute) sipg_factor_tracer (thetis.options.CommonModelOptions attribute) sipg_factor_turb (thetis.options.ModelOptions3d attribute) sipg_factor_vertical (thetis.options.ModelOptions3d attribute) sipg_factor_vertical_tracer (thetis.options.ModelOptions3d attribute) sipg_factor_vertical_turb (thetis.options.ModelOptions3d attribute) slide_region (thetis.options.SedimentModelOptions attribute) slope_effect_angle_parameter (thetis.options.SedimentModelOptions attribute) slope_effect_parameter (thetis.options.SedimentModelOptions attribute) smagorinsky_coefficient (thetis.options.ModelOptions3d attribute) SmagorinskyViscosity (class in thetis.utility3d) solve() (thetis.diagnostics.HessianRecoverer2D method) (thetis.diagnostics.KineticEnergyCalculator method) (thetis.diagnostics.VorticityCalculator2D method) (thetis.momentum_eq.InternalPressureGradientCalculator method) (thetis.turbulence.BuoyFrequencySolver method) (thetis.turbulence.ShearFrequencySolver method) (thetis.turbulence.VerticalGradSolver method) (thetis.utility.DepthIntegratedPoissonSolver method) (thetis.utility3d.DensitySolver method) (thetis.utility3d.DensitySolverWeak method) (thetis.utility3d.ExpandFunctionTo3d method) (thetis.utility3d.Mesh3DConsistencyCalculator method) (thetis.utility3d.SmagorinskyViscosity method) (thetis.utility3d.SubFunctionExtractor method) (thetis.utility3d.VelocityMagnitudeSolver method) (thetis.utility3d.VerticalIntegrator method) (thetis.utility3d.VerticalVelocitySolver method)

solve_exner (thetis.options.SedimentModelOptions attribute) solve_nonhydrostatic_pressure (thetis.options.NonhydrostaticModelOptions attribute) solve_salinity (thetis.options.ModelOptions3d attribute) solve_stage() (thetis.implicitexplicit.IMEXGeneric method) (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.DIRKGenericUForm method) (thetis.rungekutta.ERKGeneric method) (thetis.rungekutta.ERKGenericShuOsher method) (thetis.rungekutta.RungeKuttaTimeIntegrator method) (thetis.timeintegrator.SSPRK22ALE method) solve_suspended_sediment (thetis.options.SedimentModelOptions attribute) solve_temperature (thetis.options.ModelOptions3d attribute) solve_tendency() (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.ERKGeneric method) solver_parameters (thetis.options.ExplicitMomentumTimeStepperOptions3d attribute) (thetis.options.ExplicitSWETimeStepperOptions2d attribute) (thetis.options.ExplicitTracerTimeStepperOptions2d attribute) (thetis.options.ExplicitTracerTimeStepperOptions3d attribute) (thetis.options.IMEXSWETimeStepperOptions2d attribute) (thetis.options.ImplicitMomentumTimeStepperOptions3d attribute) (thetis.options.ImplicitTracerTimeStepperOptions3d attribute) (thetis.options.NonhydrostaticModelOptions attribute) (thetis.options.SemiImplicitSWETimeStepperOptions2d attribute) (thetis.options.SemiImplicitTracerTimeStepperOptions2d attribute) (thetis.options.SteadyStateTimeStepperOptions2d attribute) (thetis.options.SWETimeStepperOptions3d attribute) (thetis.options.TimeStepperOptions attribute) solver_parameters_momentum (thetis.options.PressureProjectionSWETimeStepperOptions2d attribute) solver_parameters_pressure (thetis.options.PressureProjectionSWETimeStepperOptions2d attribute) source (thetis.options.TracerFieldOptions attribute) SourceTerm (class in thetis.momentum_eq) (class in thetis.tracer_eq) (class in thetis.tracer_eq_2d) space (thetis.diagnostics.ShallowWaterDualWeightedResidual2D property) (thetis.diagnostics.TracerDualWeightedResidual2D property) SpatialInterpolator (class in thetis.interpolation) SpatialInterpolator2d (class in thetis.interpolation) SpatialInterpolatorNCOM2d (class in thetis.forcing) SpatialInterpolatorNCOM3d (class in thetis.forcing) SpatialInterpolatorNCOMBase (class in thetis.forcing) SpatialInterpolatorROMS3d (class in thetis.forcing) SSPRK22ALE (class in thetis.timeintegrator) SSPRK33 (class in thetis.rungekutta) SSPRK33Abstract (class in thetis.rungekutta) SSPRKTimeStepperOptions3d (class in thetis.options) stability_function_name (thetis.options.GLSModelOptions attribute) StabilityFunctionBase (class in thetis.stability_functions) StabilityFunctionCanutoA (class in thetis.stability_functions) StabilityFunctionCanutoB (class in thetis.stability_functions) StabilityFunctionCheng (class in thetis.stability_functions) stage_one_prep() (thetis.timeintegrator.SSPRK22ALE method) stage_one_solve() (thetis.timeintegrator.SSPRK22ALE method) stage_two_prep() (thetis.timeintegrator.SSPRK22ALE method) stage_two_solve() (thetis.timeintegrator.SSPRK22ALE method) start_clock() (thetis.inversion_tools.InversionManager method) StationObservationManager (class in thetis.inversion_tools) SteadyState (class in thetis.timeintegrator) SteadyStateTimeStepperOptions2d (class in thetis.options) stop_annotating() (thetis.inversion_tools.InversionManager method) stop_clock() (thetis.inversion_tools.InversionManager method) store_elevation() (thetis.coupled_timeintegrator.CoupledTwoStageRK method) SubdomainProjector (class in thetis.utility) SubFunctionExtractor (class in thetis.utility3d) SumFunction (class in thetis.utility) SUPPORTED_LABELS (thetis.equation.Equation attribute) swe_integrator() (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) swe_options (thetis.options.LeapFrogTimeStepperOptions3d attribute) (thetis.options.SSPRKTimeStepperOptions3d attribute) swe_timestepper_options (thetis.options.ModelOptions2d attribute) swe_timestepper_type (thetis.options.ModelOptions2d attribute) SWETimeStepperOptions3d (class in thetis.options)

T

TabulatedThrustTurbine (class in thetis.turbines) TabulatedTidalTurbineOptions (class in thetis.options) taylor_test() (thetis.inversion_tools.InversionManager method) temperature_source_3d (thetis.options.ModelOptions3d attribute) tensor_jump() (in module thetis.utility) Term (class in thetis.equation) th_ref (thetis.options.LinearEquationOfStateOptions attribute) thetis module thetis.assembledschur module thetis.callback module thetis.configuration module thetis.coordsys module thetis.coupled_timeintegrator module thetis.coupled_timeintegrator_2d module thetis.diagnostics module thetis.equation module thetis.exner_eq module thetis.exporter module thetis.field_defs module thetis.forcing module thetis.implicitexplicit module thetis.interpolation module thetis.inversion_tools module thetis.limiter module thetis.log module thetis.momentum_eq module thetis.optimisation module thetis.options module thetis.physical_constants module thetis.rungekutta module thetis.sediment_eq_2d module thetis.sediment_model module thetis.shallowwater_eq module thetis.solver module thetis.solver2d module thetis.stability_functions module thetis.timeintegrator module thetis.timezone module thetis.tracer_eq module thetis.tracer_eq_2d module thetis.turbines module thetis.turbulence module thetis.utility module

thetis.utility3d module thetis_log_level() (in module thetis.log) thrust_coefficient (thetis.options.ConstantTidalTurbineOptions attribute) thrust_coefficient() (thetis.turbines.ConstantThrustTurbine method) (thetis.turbines.TabulatedThrustTurbine method) thrust_coefficients (thetis.options.TabulatedTidalTurbineOptions attribute) thrust_speeds (thetis.options.TabulatedTidalTurbineOptions attribute) tidal_turbine_farms (thetis.options.ModelOptions2d attribute) TidalBoundaryForcing (class in thetis.forcing) TidalTurbine (class in thetis.turbines) TidalTurbineFarm (class in thetis.turbines) TidalTurbineFarmOptions (class in thetis.options) TidalTurbineOptions (class in thetis.options) timed_region() (in module thetis.implicitexplicit) (in module thetis.rungekutta) (in module thetis.timeintegrator) timed_stage() (in module thetis) (in module thetis.callback) (in module thetis.coupled_timeintegrator) (in module thetis.coupled_timeintegrator_2d) (in module thetis.equation) (in module thetis.exporter) (in module thetis.implicitexplicit) (in module thetis.limiter) (in module thetis.rungekutta) (in module thetis.sediment_model) (in module thetis.solver) (in module thetis.solver2d) (in module thetis.timeintegrator) (in module thetis.turbulence) (in module thetis.utility) TimeIntegrator (class in thetis.timeintegrator) TimeIntegratorBase (class in thetis.timeintegrator) TimeParser (class in thetis.interpolation) TimeSearch (class in thetis.interpolation) TimeSeriesCallback2D (class in thetis.callback) TimeSeriesCallback3D (class in thetis.callback) timestep (thetis.options.CommonModelOptions attribute) timestep_2d (thetis.options.ModelOptions3d attribute) timestepper_options (thetis.options.ModelOptions3d attribute) timestepper_type (thetis.options.ModelOptions3d attribute) TimeStepperOptions (class in thetis.options) TimeStepperOptions3d (class in thetis.options) TKEEquation (class in thetis.turbulence) TKESourceTerm (class in thetis.turbulence) to_lonlat() (thetis.coordsys.CoordinateSystem method) (thetis.coordsys.UTMCoordinateSystem method) to_xy() (thetis.coordsys.UTMCoordinateSystem method) TPXOTidalBoundaryForcing (class in thetis.forcing) tracer_advective_velocity_factor (thetis.options.ModelOptions2d attribute) tracer_element_family (thetis.options.ModelOptions2d attribute) tracer_integrator() (thetis.coupled_timeintegrator_2d.CoupledTimeIntegrator2D method) tracer_only (thetis.options.ModelOptions2d attribute) tracer_picard_iterations (thetis.options.ModelOptions2d attribute) tracer_timestepper_options (thetis.options.ModelOptions2d attribute) tracer_timestepper_type (thetis.options.ModelOptions2d attribute) TracerDualWeightedResidual2D (class in thetis.diagnostics) TracerEquation (class in thetis.tracer_eq) TracerEquation2D (class in thetis.tracer_eq_2d) TracerFieldOptions (class in thetis.options) TracerMassConservation2DCallback (class in thetis.callback) TracerMassConservationCallback (class in thetis.callback) TracerOvershootCallBack (class in thetis.callback) TracerTerm (class in thetis.tracer_eq) (class in thetis.tracer_eq_2d) TransectCallback (class in thetis.callback) turbine_coordinates (thetis.options.DiscreteTidalTurbineFarmOptions attribute) turbine_density (thetis.options.TidalTurbineFarmOptions attribute) turbine_options (thetis.options.TidalTurbineFarmOptions attribute) turbine_type (thetis.options.TidalTurbineFarmOptions attribute) TurbineFunctionalCallback (class in thetis.turbines) TurbineOptimisationCallback (class in thetis.turbines) turbulence_model_options (thetis.options.ModelOptions3d attribute) turbulence_model_type (thetis.options.ModelOptions3d attribute) TurbulenceModel (class in thetis.turbulence) TurbulenceModelOptions (class in thetis.options) tzname() (thetis.timezone.FixedTimeZone method)

U

unfrozen() (in module thetis.utility) update() (thetis.assembledschur.AssembledSchurPC method) (thetis.configuration.OptionsBase method) (thetis.sediment_model.CorrectiveVelocityFactor method) (thetis.sediment_model.SedimentModel method) update_elem_height() (thetis.utility3d.ALEMeshUpdater method) update_fields_old() (thetis.timeintegrator.TimeIntegrator method) update_free_surface (thetis.options.NonhydrostaticModelOptions attribute) update_mesh_coordinates() (thetis.utility3d.ALEMeshUpdater method) update_progress() (thetis.inversion_tools.InversionManager method) update_solution() (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.ERKGeneric method) update_solver() (thetis.implicitexplicit.IMEXGeneric method) (thetis.rungekutta.DIRKGeneric method) (thetis.rungekutta.DIRKGenericUForm method) (thetis.rungekutta.ERKGeneric method) (thetis.rungekutta.ERKGenericShuOsher method) (thetis.timeintegrator.CrankNicolson method) (thetis.timeintegrator.ForwardEuler method) (thetis.timeintegrator.PressureProjectionPicard method) (thetis.timeintegrator.SteadyState method) update_stations_in_use() (thetis.inversion_tools.StationObservationManager method) upwind_correction (thetis.options.DiscreteTidalTurbineFarmOptions attribute) use_advective_velocity_correction (thetis.options.SedimentModelOptions attribute) use_ale_moving_mesh (thetis.options.ModelOptions3d attribute) use_angle_correction (thetis.options.SedimentModelOptions attribute) use_automatic_timestep (thetis.options.ExplicitTimeStepperOptions attribute) (thetis.options.SSPRKTimeStepperOptions3d attribute) use_automatic_wetting_and_drying_alpha (thetis.options.ModelOptions2d attribute) use_baroclinic_formulation (thetis.options.ModelOptions3d attribute)

use_bedload (thetis.options.SedimentModelOptions attribute) use_bottom_friction (thetis.options.ModelOptions3d attribute) use_conservative_form (thetis.options.TracerFieldOptions attribute) use_grad_depth_viscosity_term (thetis.options.CommonModelOptions attribute) use_grad_div_viscosity_term (thetis.options.CommonModelOptions attribute) use_implicit_vertical_diffusion (thetis.options.ModelOptions3d attribute) use_lax_friedrichs_tracer (thetis.options.CommonModelOptions attribute) use_lax_friedrichs_velocity (thetis.options.CommonModelOptions attribute) use_limiter_for_tracers (thetis.options.CommonModelOptions attribute) use_limiter_for_velocity (thetis.options.ModelOptions3d attribute) use_nonlinear_equations (thetis.options.CommonModelOptions attribute) use_quadratic_density (thetis.options.ModelOptions3d attribute) use_quadratic_pressure (thetis.options.ModelOptions3d attribute) use_secondary_current (thetis.options.SedimentModelOptions attribute) use_sediment_conservative_form (thetis.options.SedimentModelOptions attribute) use_sediment_slide (thetis.options.SedimentModelOptions attribute) use_semi_implicit_linearization (thetis.options.PressureProjectionSWETimeStepperOptions2d attribute) (thetis.options.SemiImplicitTimeStepperOptions2d attribute) use_slope_mag_correction (thetis.options.SedimentModelOptions attribute) use_smagorinsky_viscosity (thetis.options.ModelOptions3d attribute) use_supg_tracer (thetis.options.ModelOptions2d attribute) use_tracer_conservative_form (thetis.options.ModelOptions2d attribute) use_turbulence (thetis.options.ModelOptions3d attribute) use_turbulence_advection (thetis.options.ModelOptions3d attribute) use_wetting_and_drying (thetis.options.ModelOptions2d attribute) UserExportManager (class in thetis.optimisation) UserExportOptimisationCallback (class in thetis.optimisation) UTMCoordinateSystem (class in thetis.coordsys) uv_2d (thetis.diagnostics.VorticityCalculator2D attribute) uv_nc_file (thetis.forcing.FES2004TidalBoundaryForcing attribute)

V

validate() (thetis.configuration.BoundedFloat method) (thetis.configuration.BoundedInteger method) (thetis.configuration.DatetimeTraitlet method) (thetis.configuration.FiredrakeCoefficient method) (thetis.configuration.FiredrakeConstantTraitlet method) (thetis.configuration.FiredrakeScalarExpression method) (thetis.configuration.FiredrakeVectorExpression method) (thetis.configuration.NonNegativeFloat method) (thetis.configuration.NonNegativeInteger method) (thetis.configuration.PETScSolverParameters method) (thetis.configuration.PositiveFloat method) (thetis.configuration.PositiveInteger method) variable_names (thetis.callback.AccumulatorCallback attribute) (thetis.callback.DetectorsCallback property) (thetis.callback.DiagnosticCallback property) (thetis.callback.MinMaxConservationCallback attribute) (thetis.callback.ScalarConservationCallback attribute) (thetis.callback.TimeSeriesCallback2D attribute) (thetis.callback.TimeSeriesCallback3D attribute) (thetis.callback.TransectCallback attribute) (thetis.callback.VerticalProfileCallback attribute) (thetis.optimisation.ConstantControlOptimisationCallback attribute) (thetis.optimisation.DerivativeConstantControlOptimisationCallback attribute) (thetis.optimisation.FunctionalOptimisationCallback attribute) (thetis.turbines.TurbineFunctionalCallback attribute) (thetis.turbines.TurbineOptimisationCallback attribute)

VectorCoordSysRotation (class in thetis.coordsys) velocity_correction() (thetis.turbines.TidalTurbine method) VelocityMagnitudeSolver (class in thetis.utility3d) verbose (thetis.options.CommonModelOptions attribute) VertexBasedP1DGLimiter (class in thetis.limiter) vertical (thetis.utility.ElementContinuity attribute) vertical_diffusivity (thetis.options.ModelOptions3d attribute) vertical_velocity_scale (thetis.options.ModelOptions3d attribute) vertical_viscosity (thetis.options.ModelOptions3d attribute) VerticalAdvectionTerm (class in thetis.momentum_eq) (class in thetis.tracer_eq) VerticalDiffusionTerm (class in thetis.tracer_eq) VerticalGradSolver (class in thetis.turbulence) VerticalIntegrator (class in thetis.utility3d) VerticalProfileCallback (class in thetis.callback) VerticalVelocitySolver (class in thetis.utility3d) VerticalViscosityTerm (class in thetis.momentum_eq) view() (thetis.assembledschur.AssembledSchurPC method) visc_min (thetis.options.GLSModelOptions attribute) volume_source_2d (thetis.options.CommonModelOptions attribute) VolumeConservation2DCallback (class in thetis.callback) VolumeConservation3DCallback (class in thetis.callback) VorticityCalculator2D (class in thetis.diagnostics) VTKExporter (class in thetis.exporter)

W

warning() (in module thetis.log) wd_bathymetry_displacement() (thetis.utility.DepthExpression method) wetting_and_drying_alpha (thetis.options.ModelOptions2d attribute)

wetting_and_drying_alpha_max (thetis.options.ModelOptions2d attribute) wetting_and_drying_alpha_min (thetis.options.ModelOptions2d attribute) wind_stress (thetis.options.CommonModelOptions attribute) WindStressTerm (class in thetis.shallowwater_eq)